Search results - ORA - Oxford University Research Archive

1

Journal article

Structural basis for proton coupled cystine transport by cystinosin

Löbel, M, Salphati, SP, El Omari, K, et al.
2022-08-17

2

Journal article

In vitro selection of macrocyclic peptide inhibitors containing cyclic γ2,4-amino acids targeting the SARS-CoV-2 main protease

Miura, T, Malla, TR, Owen, D, et al.
2023

3

Journal article

Liver glycogen phosphorylase is upregulated in glioblastoma and provides a metabolic vulnerability to high dose radiation

Zois, CE, Hendriks, AM, Haider, S, et al.
2022-06-28

4

Journal article

A robust COVID-19 mortality prediction calculator based on Lymphocyte count, Urea, C-Reactive Protein, Age and Sex (LUCAS) with chest X-rays

Ray, S, Banerjee, A, Swift, A, et al.
2022-10-29

5

Journal article

Off-target integron activity leads to rapid plasmid compensatory evolution in response to antibiotic selection pressure

Escudero, J, Souque, C, Maclean, R
2023

6

Journal article

Automated clinical coding: what, why, and where we are?

Dong, H, Falis, M, Whiteley, W, et al.
2022-10-22

7

Journal article

Classification of tetanus severity in intensive-care settings for low-income countries using wearable sensing

Lu, P, Ghiasi, S, Hagenah, J, et al.
2022-08-30

8

Dataset

Equity and inclusivity in research funding: barriers and delivering change

Gladstone, J, Schipper, L, Hara-Msulira, T, et al.
2023

9

Journal article

Development of a mortality prediction model in hospitalised SARS-CoV-2 positive patients based on routine kidney biomarkers

Boss, AN, Banerjee, A, Mamalakis, M, et al.
2022-06-30

10

Journal article

Gut to lung translocation and antibiotic mediated selection shape the dynamics of Pseudomonas aeruginosa in an ICU patient

Wheatley, RM, Diaz Caballero, J, van der Schalk, TE, et al.
2022-11-22

11

Journal article

Quantitative energy storage and ejection release in superelastic shape memory alloy wire

Sui, WC, Pei, YC, Wang, BH, et al.
2022-12-22

12

Dataset

Deep Antimicrobial Susceptibility Phenotyping (DASP) Training and Evaluation Dataset, and Trained Models.

Zagajewski, A, Turner, P, Feehily, C, et al.
2023

13

Journal article

Gain-of-function mutations in KCNK3 cause a developmental disorder with sleep apnea

Sörmann, J, Schewe, M, Proks, P, et al.
2022-10-04

14

Journal article

Virus detection and identification in minutes using single-particle imaging and deep learning

Shiaelis, N, Tometzki, A, Peto, L, et al.
2022

15

Journal article

The evolution of spectrum in antibiotics and bacteriocins

Palmer, JD, Foster, KR
2022-09-13

16

Journal article

Host control and the evolution of cooperation in host microbiomes

Sharp, C, Foster, KR
2022-06-22

17

Journal article

Genome-wide association studies identify an association of transferrin binding protein B variation and invasive serogroup Y meningococcal disease in older adults

Maynard-Smith, L, Derrick, JP, Borrow, R, et al.
2022-11-02

18

Journal article

Python-Microscope - a new open-source Python library for the control of microscopes

Susano Pinto, DM, Phillips, MA, Hall, N, et al.
2021-10-06

19

Journal article

Transition between conformational states of the TREK-1 K2P channel promoted by interaction with PIP2

Panasawatwong, A, Pipatpolkai, T, Tucker, SJ
2022-06-21

20

Journal article

Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses

McNaughton, AL, Paton, RS, Edmans, M, et al.
2022-05-24

21

Journal article

Immune-mediated competition benefits protective microbes over pathogens in a novel host species

Ford, S, Drew, G, King, KC
2022-11-09

22

Journal article

Ultrasound-triggered delivery of iproplatin from microbubble-conjugated liposomes

Browning, R, Thomas, N, Marsh, LK, et al.
2021-10-27

23

Journal article

Machine actionable metadata models

Batista, D, Gonzalez-Beltran, A, Sansone, S, et al.
2022-09-30

24

Journal article

Core genome multilocus sequence typing scheme for improved characterization and epidemiological surveillance of pathogenic Brucella

Abdel-Glil, MY, Thomas, P, Brandt, C, et al.
2022-07-19

25

Journal article

Localized pmrB hypermutation drives the evolution of colistin heteroresistance

Kapel, N, diaz, J, Maclean, R
2022-06-07

26

Journal article

PyPlr: A versatile, integrated system of hardware and software for researching the human pupillary light reflex

Martin, JT, Pinto, J, Bulte, D, et al.
2021-12-16

27

Journal article

Pre-existing chromosomal polymorphisms in pathogenic E. coli potentiate the evolution of resistance to a last-resort antibiotic

Jangir, P, Yang, Q, Shaw, L, et al.
2022-08-09

28

Conference item

Automated annotator: capturing expert knowledge for free

Elmes, S, Chakraborti, T, Fan, M, et al.
2021-12-09

29

Journal article

Quantification of vascular networks in photoacoustic mesoscopy

Brown, EL, Lefebvre, TL, Sweeney, PW, et al.
2022-04-20

30

Journal article

ISA API: an open platform for interoperable life science experimental metadata

Johnson, D, Batista, D, Cochrane, K, et al.
2021-09-16

31

Journal article

Sepsis mortality prediction using wearable monitoring in low-middle income countries

Ghiasi, S, Zhu, T, Lu, P, et al.
2022-05-19

32

Journal article

Image quality assessment for machine learning tasks using meta-reinforcement learning

Saeed, SU, Fu, Y, Stavrinides, V, et al.
2022-03-21

33

Journal article

Ribosomal MLST nucleotide identity (rMLST-NI), a rapid bacterial species identification method: application to Klebsiella and Raoultella genomic species validation

Bray, JE, Correia, AP, Varga, M, et al.
2022-09-13

34

Journal article

A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies

Bridel, S, Bouchez, V, Brancotte, B, et al.
2022-07-01

35

Journal article

Stage 2 Registered Report: how responsibility attributions to self and others relate to outcome ownership in group decisions

Jaquiery, MD, El Zein, M
2021-12-23

36

Journal article

Stage 1 Registered Report: how responsibility attributions to self and others relate to outcome ownership in group decisions

Jaquiery, MD, El Zein, M
2021-02-05

37

Journal article

Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs

Colquhoun, RM, Hall, MB, Lima, L, et al.
2021-09-14

38

Journal article

Increasing diversity in admissions to postgraduate study

Conway, SJ, Kawamura, A, Marr, TM, et al.
2022-04-19

39

Journal article

Application of a Neisseria meningitidis antigen microarray to identify candidate vaccine proteins from a human Phase I clinical trial

Chang, C-M, Awanye, AM, Marsay, L, et al.
2022-05-21

40

Journal article

Evolutionary processes driving the rise and fall of Staphylococcus aureus ST239, a dominant hybrid pathogen

Gill, JL, Hedge, J, Wilson, DJ, et al.
2021-12-14

41

Journal article

The Neisseria gonorrhoeae accessory genome and its association with the core genome and antimicrobial resistance

de Korne-Elenbaas, J, Bruisten, S, van Dam, AP, et al.
2022-05-23

42

Journal article

Microbial protection favours parasite tolerance and alters host-parasite coevolutionary dynamics

Rafaluk-Mohr, C, Gerth, M, Sealey, J, et al.
2022-02-10

43

Journal article

OxVent: Design and evaluation of a rapidly-manufactured Covid-19 ventilator

Beale, R, Rosendo, JB, Bergeles, C, et al.
2022-02-13

44

Journal article

Understanding the potential impact of different drug properties on severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) transmission and disease burden: a modelling analysis

Whittaker, C, Watson, OJ, Alvarez-Moreno, C, et al.
2021-09-21

45

Journal article

Machine learning to predict the source of campylobacteriosis using whole genome data

Arning, N, Sheppard, SK, Bayliss, S, et al.
2021-10-18

46

Journal article

Comparison of domain adaptation techniques for white matter hyperintensity segmentation in brain MR images

Sundaresan, V, Zamboni, G, Dinsdale, NK, et al.
2021-08-17

47

Thesis

Inferring dated genealogies from modern and ancient genomes

Wohns, AWL
2021

48

Dataset

Localized hypermutation drives the evolution of colistin heteroresistance

MacLean, C, Diaz, J, Kapel, N
2022

49

Journal article

New method to measure interbreath intervals in infants for the assessment of apnoea and respiration

Adjei, T, Purdy, R, Jorge, J, et al.
2021-12-10

50

Journal article

Rapid evidence review to inform safe return to campus in the context of coronavirus disease 2019 (COVID-19)

Greenhalgh, T, Katzourakis, A, Wyatt, TD, et al.
2021-10-20

51

Journal article

Mass spectrometric assays reveal discrepancies in inhibition profiles for the SARS-CoV-2 papain-like protease

Brewitz, L, Kamps, JJAG, Lukacik, P, et al.
2022-02-17

52

Journal article

Human B cell responses to dominant and sub-dominant antigens induced by a meningococcal outer membrane vesicle vaccine in a phase I trial

Rollier, CS, Dold, C, Marsay, L, et al.
2022-01-26

53

Journal article

The rate-limiting step of DNA synthesis by DNA polymerase occurs in the fingers-closed conformation

Evans, GW, Craggs, T, Kapanidis, AN
2021-12-17

54

Conference item

Comparison between the modelled response of primary motor cortex neurons to pulse-width modulated and conventional TMS stimuli

Wendt, K, Sorkhabi, MM, O'Shea, J, et al.
2021-12-09

55

Journal article

Inferring Mycobacterium bovis transmission between cattle and badgers using isolates from the Randomised Badger Culling Trial

van Tonder, AJ, Thornton, MJ, Conlan, AJK, et al.
2021-11-29

56

Journal article

Competitive binding of MatP and topoisomerase IV to the MukB hinge domain

Fisher, GL, Bolla, JR, Rajasekar, KV, et al.
2021-09-29

57

Journal article

Transcription initiation at a consensus bacterial promoter proceeds via a 'bind-unwind-load-and-lock' mechanism

Mazumder, A, Ebright, RH, Kapanidis, A
2021-10-11

58

Journal article

Structure-activity studies reveal scope for optimisation of Ebselen-type inhibition of SARS-COV-2 main protease

Thun-Hohenstein, STD, Suits, TF, Malla, TR, et al.
2021-12-27

59

Journal article

Establishment of a publicly available core genome multilocus sequence typing scheme for Clostridium perfringens

Abdel-Glil, MY, Thomas, P, Linde, J, et al.
2021-10-27

60

Journal article

Water nanoconfined in a hydrophobic pore: molecular dynamics simulations of transmembrane protein 175 and the influence of water models

Lynch, CI, Klesse, G, Rao, S, et al.
2021-11-16

61

Journal article

Dynamic design: manipulation of millisecond timescale motions on the energy landscape of cyclophilin A

Juárez-Jiménez, J, Gupta, AA, Karunanithy, G, et al.
2020-01-15

62

Journal article

2-Oxoglutarate derivatives can selectively enhance or inhibit the activity of human oxygenases

Nakashima, Y, Brewitz, L, Tumber, A, et al.
2021-11-10

63

Journal article

Malaria infection and severe disease risks in Africa

Paton, RS, Kamau, A, Akech, S, et al.
2021-08-20

64

Journal article

The methyltransferase METTL9 mediates pervasive 1-methylhistidine modification in mammalian proteomes

Davydova, E, Shimazu, T, Schuhmacher, MK, et al.
2021-02-09

65

Journal article

Improved synthesis of phosphoramidite-protected N6-methyladenosine via BOP-mediated SNAr reaction

Shishodia, S, Schofield, CJ
2020-12-31

66

Journal article

Design and enantioselective synthesis of 3-(α-acrylic acid) benzoxaboroles to combat carbapenemase resistance

Xiao, Y-C, Chen, X-P, Deng, J, et al.
2021-07-14

67

Journal article

Exploiting electrode nanoconfinement to investigate the catalytic properties of isocitrate dehydrogenase (IDH1) and a cancer-associated variant

Herold, RA, Reinbold, R, Megarity, CF, et al.
2021-06-25

68

Journal article

The evolution of strategy in bacterial warfare via the regulation of bacteriocins and antibiotics

Niehus, R, Oliveira, NM, Li, A, et al.
2021-09-07

69

Journal article

Altering the binding properties of PRDM9 partially restores fertility across the species boundary

Davies, B, Gupta Hinch, A, Cebrian-Serrano, A, et al.
2021-09-07

70

Journal article

Three-dimensional adaptive optical nanoscopy for thick specimen imaging at sub-50-nm resolution

Hao, X, Allgeyer, ES, Lee, D-R, et al.
2021-05-31

71

Journal article

A recombinant commensal bacteria elicits heterologous antigen-specific immune responses during pharyngeal carriage

Laver, JR, Gbesemete, D, Dale, AP, et al.
2021-07-07

72

Thesis

Modelling thermoregulation for prosthetic design

Diment, L
2019

73

Journal article

Inferring transmission bottleneck size from viral sequence data using a novel haplotype reconstruction method

Ghafari, M, Lumby, CK, Weissman, DB, et al.
2020-06-16

74

Journal article

Induced polarization in molecular dynamics simulations of the 5-HT3 receptor channel

Klesse, G, Rao, S, Tucker, SJ, et al.
2020-04-27

75

Journal article

Mechanistic insights into the three steps of poly(ADP-ribosylation) reversal

Rack, JGM, Liu, Q, Zorzini, V, et al.
2021-07-28

76

Journal article

An evaluation of the species and subspecies of the genus Salmonella with whole genome sequence data: Proposal of type strains and epithets for novel S. enterica subspecies VII, VIII, IX, X and XI

Pearce, ME, Langridge, GC, Lauer, AC, et al.
2021-07-07

77

Journal article

Factor H binding protein (fHbp)-mediated differential complement resistance of a serogroup C Neisseria meningitidis isolate from cerebrospinal fluid of a patient with invasive meningococcal disease

Facchetti, A, Wheeler, JX, Vipond, C, et al.
2021-09-09

78

Journal article

Single-molecule, super-resolution, and functional analysis of G protein-coupled receptor behavior within the T cell immunological synapse

Felce, JH, Parolini, L, Sezgin, E, et al.
2020-01-18

79

Journal article

Evolutionary constraints on the acquisition of antimicrobial peptide resistance in bacterial pathogens

Jangir, P, Ogunlana, L, Maclean, RC
2021-04-06

80

Journal article

SARS-CoV-2 reinfection caused by the P.1 lineage in Araraquara city, Sao Paulo State, Brazil

Romano, CM, Felix, AC, Paula, AVD, et al.
2021-04-23

81

Journal article

RNA polymerase clamp conformational dynamics: long-lived states and modulation by crowding, cations, and nonspecific DNA binding

Mazumder, A, Wang, A, Uhm, H, et al.
2021-02-15

82

Journal article

Examination of optimized protocols for pCASL: Sensitivity to macrovascular contamination, flow dispersion, and prolonged arterial transit time

Woods, JG, Okell, TW, Chappell, MA
2021-05-19

83

Journal article

The role of the Xist 5' m6A region and RBM15 in X chromosome inactivation

Coker, H, Wei, G, Moindrot, B, et al.
2020-02-17

84

Journal article

Ordered dephosphorylation initiated by the selective proteolysis of cyclin B drives mitotic exit

Holder, J, Mohammed, S, Barr, FA
2020-09-01

85

Journal article

Rapid genotype imputation from sequence with reference panels

Davies, RW, Kucka, M, Su, D, et al.
2021-06-03

86

Journal article

The Beacon Calculus: A formal method for the flexible and concise modelling of biological systems

Boemo, MA, Cardelli, L, Nieduszynski, CA
2020-03-09

87

Journal article

Fluorinated derivatives of pyridine-2,4-dicarboxylate are potent inhibitors of human 2-oxoglutarate dependent oxygenases

Brewitz, L, Nakashima, Y, Tumber, A, et al.
2021-05-13

88

Journal article

Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil

Faria, NR, Mellan, TA, Whittaker, C, et al.
2021-04-14

89

Journal article

Genomic epidemiology of group B streptococci spanning 10 years in an Irish Maternity Hospital, 2008-2017

Meehan, M, Eogan, M, McCallion, N, et al.
2021-04-13

90

Journal article

Human oxygenase variants employing a single protein Fe(II) ligand are catalytically active

Brasnett, A, Pfeffer, I, Brewitz, L, et al.
2021-05-19

91

Thesis

Fluorescent nanodiamonds for nanosensing and single-molecule imaging

Sow, M
2021

92

Journal article

VSG mRNA levels are regulated by the production of functional VSG protein

Maudlin, IE, Kelly, SB, Schwede, A, et al.
2020-12-19

93

Journal article

Rapid evolution and host immunity drive the rise and fall of carbapenem resistance during an acute Pseudomonas aeruginosa infection

Wheatley, R, Diaz Caballero, J, Kapel, N, et al.
2021-04-28

94

Journal article

COSMAS: A lightweight toolbox for cardiac optical mapping analysis

Tomek, J, Wang, Z, Burton, RB, et al.
2021-04-28

95

Journal article

Discovery of neuroprotective agents that inhibit human prolyl hydroxylase PHD2

Richardson, NL, O'Malley, LJ, Weissberger, D, et al.
2021-03-24

96

Journal article

Structures of the archaerhodopsin-3 transporter reveal that disordering of internal water networks underpins receptor sensitization

Bada Juarez, JF, Judge, PJ, Adam, S, et al.
2021-01-27

97

Journal article

INSIGHT: A population-scale COVID-19 testing strategy combining point-of-care diagnosis with centralized high-throughput sequencing

Wu, Q, Suo, C, Brown, T, et al.
2021-02-12

98

Journal article

Integron activity accelerates the evolution of antibiotic resistance..

Souque, C, Escudero, JA, MacLean, RC
2021-04-06

99

Journal article

High-resolution targeted 3C interrogation of cis-regulatory element organization at genome-wide scale

Downes, DJ, Beagrie, RA, Gosden, ME, et al.
2021-01-22

100

Journal article

Faropenem reacts with serine and metallo-β-lactamases to give multiple products

Lucic, A, Hinchliffe, P, Malla, T, et al.
2021-02-09