Search results - ORA - Oxford University Research Archive

1

Journal article

Inflammatory gene expression associates with hepatitis B virus cccDNA- but not integrant-derived transcripts in HBeAg negative disease

Magri, A, Harris, JM, D'Arienzo, V, et al.
2022-05-17

2

Journal article

Generating weighted and thresholded gene coexpression networks using signed distance correlation.

Pardo-Diaz, J, Poole, PS, Beguerisse-Díaz, M, et al.
2022-06-16

3

Journal article

A diversified and segregated mRNA spliced-leader system in the parasitic Perkinsozoa

Alacid, E, Irwin, NAT, Smilansky, V, et al.
2022-08-24

4

Journal article

Connecting tree-ring phenotypes, genetic associations and transcriptomics to decipher the genomic architecture of drought adaptation in a widespread conifer

Depardieu, C, Gérardi, S, Nadeau, S, et al.
2021-03-06

5

Journal article

Changes in presynaptic gene expression during homeostatic compensation at a central synapse

Harrell, ER, Pimentel, D, Miesenböck, G
2021-02-19

6

Thesis

Unbiased molecular definition of epithelial barrier formation and defects driving inflammatory bowel disease

Fawkner-Corbett, D
2021

7

Thesis

Key transcriptional regulators of neutrophil function in inflammation

Transcriptional regulation of neutrophils during inflammation
Ai, Z
2021

8

Journal article

Control of impulsivity by Gi-protein signalling in layer-5 pyramidal neurons of the anterior cingulate cortex

van der Veen, B, Kapanaiah, SKT, Kilonzo, K, et al.
2021-06-02

9

Journal article

Codon-optimized RPGR improves stability and efficacy of AAV8 gene therapy in two mouse models of X-linked retinitis pigmentosa

Fischer, MD, McClements, ME, Martinez-Fernandez de la Camara, C, et al.
2017-08-01

10

Journal article

Mom’s diet matters: Maternal prebiotic intake in mice reduces anxiety and alters brain gene expression and the fecal microbiome in offspring

Hebert, JC, Radford-Smith, DE, Probert, F, et al.
2020-10-05

11

Journal article

Combining whole-cell patch-clamp recordings with single-cell RNA sequencing

Mahfooz, K, Ellender, TJ
2020-10-30

12

Journal article

Purification and characterization of MxB

Alvarez, FJD, Zhang, P
2020-06-12

13

Journal article

BAP1 constrains pervasive H2AK119ub1 to control the transcriptional potential of the genome

Fursova, NA, Turberfield, AH, Blackledge, NP, et al.
2021-04-22

14

Thesis

Investigating the effects of IFNγ signalling on transcriptional, epigenetic and enhancer landscapes

Lamstaes, A
2021

15

Journal article

ON-bipolar cell gene expression during retinal degeneration: implications for optogenetic visual restoration

Gilhooley, M, Hickey, D, Lindner, M, et al.
2021-03-31

16

Journal article

Spatiotemporal analysis of human intestinal development at single-cell resolution

Fawkner-Corbett, D, Antanaviciute, A, Parikh, K, et al.
2021-01-05

17

Journal article

Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability

Lagou, V, Mägi, R, Hottenga, J-J, et al.
2021-01-05

18

Journal article

Non-coding RNAs set the stage for RNA polymerase II transcription

Studniarek, C, Egloff, S, Murphy, S
2020-10-09

19

Journal article

Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort

Kulyté, A, Lundbäck, V, Lindgren, CM, et al.
2020-01-25

20

Journal article

Mutation-independent proteomic signatures of pathological progression in murine models of Duchenne muscular dystrophy

van Westering, TLE, Johansson, HJ, Hanson, B, et al.
2020-09-29

21

Journal article

Conserved residues in Ycf54 are required for protochlorophyllide formation in Synechocystis sp. PCC 6803.

Hollingshead, S, Bliss, S, Baker, PJ, et al.
2016-12-20

22

Journal article

PCIF1 catalyzes m6Am mRNA methylation to regulate gene expression

Sendinc, E, Valle-Garcia, D, Dhall, A, et al.
2019-07-03

23

Journal article

Targeted RNA sequencing enhances gene expression profiling of ultra-low input samples

Curion, F, Handel, A, Attar, M, et al.
2020-06-28

24

Journal article

Correction of amyotrophic lateral sclerosis related phenotypes in induced pluripotent stem cell-derived motor neurons carrying a hexanucleotide expansion mutation in C9orf72 by CRISPR/Cas9 genome editing using homology-directed repair

Ababneh, NA, Scaber, J, Flynn, R, et al.
2020-06-05

25

Journal article

The role of the microbiome in the neurobiology of social behaviour

Sarkar, A, Harty, S, Johnson, K, et al.
2020-05-07

26

Journal article

A mini-atlas of gene expression for the domestic goat (capra hircus)

Muriuki, C, Bush, SJ, Salavati, M, et al.
2019-11-04

27

Journal article

Targeting TGFβ signalling in cancer: Toward context-specific strategies

Rhiannon French, Pauklin, S, Feng, Y
2020-04-08

28

Journal article

Patterns of Host Genome—Wide Gene Transcript Abundance in the Peripheral Blood of Patients with Acute Dengue Hemorrhagic Fever

Simmons, C, Popper, S, Dolocek, C, et al.
2007-04-15

29

Journal article

Blood eosinophil count and airway epithelial transcriptome relationships in COPD versus asthma

George, L, Taylor, AR, Esteve-Codina, A, et al.
2019-09-10

30

Journal article

Gene expression profiles of changes underlying different-sized human rotator cuff tendon tears

Chaudhury, S, Xia, Z, Thakkar, D, et al.
2016-04-27

31

Journal article

Synergy between variant PRC1 complexes defines polycomb-mediated gene repression

Fursova, NA, Blackledge, NP, Nakayama, M, et al.
2019-04-24

32

Journal article

Cathepsin L regulates metabolic networks controlling rapid cell growth and proliferation

Weiss Sadan, T, Itzhak, G, Kaschani, F, et al.
2019-04-22

33

Journal article

Elucidating the role of chromatin state and transcription factors on the regulation of the Yeast Metabolic Cycle: a multi-omic integrative approach

Sánchez-Gaya, V, Casaní-Galdón, S, Ugidos, M, et al.
2018-11-30

34

Journal article

Expression of TLR4-PTGE2 signaling genes in atherosclerotic carotid plaques and peripheral blood

Ferronato, S, Scuro, A, Fochi, S, et al.
2018-11-12

35

Journal article

Global accumulation of circRNAs during aging in Caenorhabditis elegans

Cortés-López, M, Gruner, MR, Cooper, DA, et al.
2018-01-03

36

Journal article

A protocol for extraction of total RNA from finger stick whole blood samples preserved with TempusTM solution

Kabeer, BSA, Tomei, S, Mattei, V, et al.
2018-11-02

37

Journal article

Secretome proteins regulate comparative osteogenic and adipogenic potential in bone marrow and dental stem cells

Kumar, A, Kumar, V, Rattan, V, et al.
2018-10-24

38

Journal article

The two “rules of speciation” in species with young sex chromosomes

Filatov, D
2018-05-21

39

Journal article

Endothelial-specific Cre mouse models: Is your Cre CREdibile?

Payne, S, De Val, S, Neal, A
2018-09-27

40

Journal article

Nature-based tourism elicits a phenotypic shift in the coping abilities of fish

Geffroy, B, Sadoul, B, Bouchareb, A, et al.
2018-02-05

41

Journal article

CTP synthase forms the cytoophidium in human hepatocellular carcinoma

Chang, C, Jeng, Y, Peng, M, et al.
2017-10-31

42

Journal article

Endogenous hepcidin and its agonist mediate resistance to selected infections by clearing non-transferrin-bound iron

Stefanova, D, Raychev, A, Arezes, J, et al.
2017-07-20

43

Journal article

Analysis of motor dysfunction in Down Syndrome reveals motor neuron degeneration

Watson-Scales, S, Kalmar, B, Lana-Elola, E, et al.
2018-05-10

44

Journal article

Correlations between gene expression highlight a different activation of ACE/TLR4/PTGS2 signaling in symptomatic and asymptomatic plaques in atherosclerotic patients

Ferronato, S, Alberto, S, Gomez-Lira, M, et al.
2018-06-19

45

Journal article

FBXL19 recruits CDK-Mediator to CpG islands of developmental genes priming them for activation during lineage commitment

Dimitrova, E, Kondo, T, Feldmann, A, et al.
2018-05-29

46

Journal article

Conserved helix-flanking prolines modulate intrinsically disordered protein: target affinity by altering the lifetime of the bound complex

Crabtree, MD, Borcherds, W, Poosapati, A, et al.
2017-04-20

47

Journal article

ADP-ribosylation: new facets of an ancient modification

Palazzo, L, Mikoč, A, Ahel, I
2017-04-06

48

Journal article

Molecular and functional sex differences of noradrenergic neurons in the mouse locus coeruleus

Mulvey, B, Bhatti, DL, Gyawali, S, et al.
2018-05-22

49

Journal article

Genomic responses of mouse synovial fibroblasts during tumor necrosis factor-driven arthritogenesis greatly mimic those in human rheumatoid arthritis

Ntougkos, E, Chouvardas, P, Roumelioti, F, et al.
2017-04-13

50

Journal article

Proteomic analysis of the cell cycle of procylic form Trypanosoma brucei

Crozier, TWM, Tinti, M, Wheeler, RJ, et al.
2018-03-19

51

Conference item

Simultaneous clustering of multiple heterogeneous gene expression datasets

Abu-Jamous, B, Kelly, S
2018-01-15

52

Journal article

Variability of genome-wide DNA methylation and mRNA expression profiles in reproductive and endocrine disease related tissues

Rahmioglu, N, Drong, A, Lockstone, H, et al.
2017-11-27

53

Journal article

A bacterial artificial chromosome reporter system for expression of the human FOXP3 gene in mouse regulatory T-cells.

Tsuda, M, Tone, Y, Ogawa, C, et al.
2017-03-01

54

Journal article

Characterization of RBP9 and RBP10, two developmentally regulated RNA-binding proteins in Trypanosoma brucei

De Pablos, L, Kelly, S, de Freitas Nascimento, J, et al.
2017-04-05

55

Journal article

Probabilistic modeling of bifurcations in single-cell gene expression data using a Bayesian mixture of factor analyzers

Campbell, K, Yau, C
2017-03-15

56

Thesis

Molecular mechanisms underlying haplotypespecific regulation of gene expression at the microtubule associated protein tau locus

Lai, M
2016

57

Journal article

Transcriptomics of human multipotent mesenchymal stromal cells: Retrospective analysis and future prospects

Kasoju, N, Wang, H, Zhang, B, et al.
2017-04-24

58

Journal article

Enhanced Klebsiella pneumoniae carbapenemase (KPC) expression from a novel Tn4401 deletion

Cheruvanky, A, Stoesser, N, Sheppard, A, et al.
2017-04-03

59

Journal article

Transcriptomics of an extended phenotype: parasite manipulation of wasp social behaviour shifts expression of caste-related genes

Geffre, A, Liu, R, Manfredini, F, et al.
2017-04-12

60

Thesis

Genes contributing to variation in fear-related behaviour

Krohn, J, Jonathan Krohn
2013

61

Journal article

Mitochondrial genes are altered in blood early in Alzheimer's disease

Lunnon, K, Keohan, A, Pidsley, R, et al.
2017-01-01

62

Journal article

Shared and distinct aspects of the sepsis transcriptomic response to fecal peritonitis and pneumonia

Burnham, K, Davenport, E, Radhakrishnan, J, et al.
2016-12-30

63

Journal article

Shared mechanisms in physiological and pathological nucleoplasmic reticulum formation

Drozdz, M, Vaux, D
2016-10-31

64

Journal article

ROOT HAIR DEFECTIVE SIX-LIKE class I genes promote root hair development in the grass Brachypodium distachyon

Kim, C, Dolan, L
2016-08-05

65

Journal article

Cleavage factor Im (CFIm) as a regulator of alternative polyadenylation

Hardy, J, Norbury, C
2016-09-15

66

Thesis

Gene expression in P. falciparum: statistical patterns and molecular determinants

Lemieux, J, Jacob Lemieux
2012

67

Thesis

Allele specific gene expression in the major histocompatibility complex

Plant, K
2012

68

Journal article

Plastic surgery beyond the human genome

Pleat, J, Dunkin, C, Zitzmann, N
2003-06-01

69

Journal article

Cytoplasmic expression systems triggered by mRNA yield increased gene expression in post-mitotic neurons

Farrow, P, Barrett, L, Stevenson, M, et al.
2006-01-01

70

Journal article

Geomagnetic field (Gmf) and plant evolution: investigating the effects of Gmf reversal on arabidopsis thaliana development and gene expression

Bertea, C, Narayana, R, Agliassa, C, et al.
2015-11-30

71

Journal article

A novel cohort of cancer-testis biomarker genes revealed through meta-analysis of clinical data sets.

Sammut, S, Feichtinger, J, Stuart, N, et al.
2014-01-01

72

Journal article

pcaReduce: Hierarchical clustering of single cell transcriptional profiles

Zurauskiene, J, Yau, C
2016-01-01

73

Thesis

Specialised transcription factories

Xu, M
2008

74

Journal article

Mitochondrial content is central to nuclear gene expression: profound implications for human health

Muir, R, Diot, A, Poulton, J
2016-01-01

75

Thesis

MicroRNA expression and activity in high-grade serous ovarian cancer

Howe, E
2012

76

Journal article

Exon array data analysis using affymetrix power tools and R statistical software

Lockstone, H
2011-11-01

77

Conference item

Artificial intelligence technique for gene expression profiling of urinary bladder cancer

Abbod, M, Catto, J, Linkens, D, et al.
2006-01-01

78

Journal article

Brain-expressed 3'UTR extensions strengthen miRNA cross-talk between ion channel/transporter encoding mRNAs.

Wehrspaun, C, Ponting, C, Marques, A
2014-01-01

79

Journal article

Gene microarray analysis using angular distribution decomposition

Lees, K, Roberts, S, Skamnioti, P, et al.
2007-03-01

80

Journal article

P-selectin expression tracks cerebral atrophy in Mexican-Americans

Kochunov, P, Glahn, D, Hong, L, et al.
2012-05-01

81

Thesis

Transcriptional brain networks and their key regulators across the human lifespan

Wehrspaun, C
2014

82

Journal article

Identification and characterization of a novel tyrosine kinase from megakaryocytes

Bennett, B, Cowley, S, Jiang, S, et al.
1994-01-14

83

Thesis

Expression of two-pore channels in mammalian primary cells and tissues, and their role in adipose tissue formation and function

Tunn, R
2012

84

Thesis

Subplate populations in normal and pathological cortical development

Oeschger, F
2011

85

Journal article

Genome organization is a major component of gene expression control in response to stress and during the cell division cycle in trypanosomes

Kelly, S, Kramer, S, Schwede, A, et al.
2012-04-01

86

Journal article

Decreased expression of vesicular glutamate transporter 1 and complexin II mRNAs in schizophrenia: further evidence for a synaptic pathology affecting glutamate neurons

Eastwood, S, Harrison, P
2005-03-01

87

Journal article

Contribution of genetic, epigenetic and transcriptomic differences to twin discordance in multiple sclerosis.

Handunnetthi, L, Handel, A, Ramagopalan, S
2010-09-01

88

Thesis

Regulation of the expression and positioning of chemotaxis and motor proteins in Rhodobacter sphaeroides

Wilkinson, D, David Wilkinson
2010

89

Journal article

Allele-specific transcription of the asthma-associated PHD finger protein 11 gene (PHF11) modulated by octamer-binding transcription factor 1 (Oct-1)

Holt, R, Zhang, Y, Binia, A, et al.
2011-04-01

90

Journal article

Fat depot-specific mRNA expression of novel loci associated with waist-hip ratio

Schleinitz, D, Kloeting, N, Lindgren, C, et al.
2014-01-01

91

Journal article

Identification of RNA-binding proteins in macrophages by interactome capture

Liepelt, A, Naarmann-de Vries, I, Simons, N, et al.
2016-01-01

92

Journal article

Rapid Y degeneration and dosage compensation in plant sex chromosomes

Papadopulos, A, Chester, M, Ridout, K, et al.
2015-01-01

93

Thesis

Crosstalk between histone modifications in Saccharomyces cerevisiae

Howe, F
2012

94

Journal article

The productive entry pathway of HIV-1 in macrophages is dependent on endocytosis through lipid rafts containing CD4

van Wilgenburg, B, Moore, M, James, W, et al.
2014-01-22

95

Journal article

The mitogen-activated protein kinase kinase MEK1 stimulates a pattern of gene expression typical of the hypertrophic phenotype in rat ventricular cardiomyocytes

Gillespie-Brown, J, Fuller, S, Bogoyevitch, M, et al.
1995-11-01

96

Journal article

Registered report: Transcriptional amplification in tumor cells with elevated c-Myc

Blum, D, Hao, H, McCarthy, M
2015-01-26