Search results - ORA - Oxford University Research Archive

1

Journal article

Pan-cancer analysis of tissue and single-cell HIF-pathway activation using a conserved gene signature

Lombardi, O, Li, R, Halim, S, et al.
2022-11-15

2

Thesis

Links between the unfolded protein response and the DNA damage response in hypoxia

Ma, TS
2022

3

Journal article

CAPTURE of the human U2 snRNA genes expands the repertoire of associated factors

Guiro, J, Fagbemi, M, Tellier, MPH, et al.
2022-05-14

4

Thesis

Elucidating the effects of DNA modification on transcription

Yavorska, O
2021

5

Thesis

Mechanistic studies of DNA repair and genome instability

Nathan, WJ
2021

6

Thesis

Reverse engineering gene regulatory circuitries in neural crest development and evolution

Candido-Ferreira, IL
2021

7

Journal article

Sweet melody or jazz? Transcription around DNA double-strand breaks

Long, Q, Liu, Z, Gullerova, M
2021-04-20

8

Thesis

Vietglish: translanguaging in Vietnamese and English

Nguyen, B-LL
2021

9

Journal article

Breaking the paradigm: early insights from mammalian DNA breakomes

Saayman, X, Esashi, F
2021-05-01

10

Thesis

Target search mode of a disordered transcription factor

Kelly, C
2021

11

Journal article

BAP1 constrains pervasive H2AK119ub1 to control the transcriptional potential of the genome

Fursova, NA, Turberfield, AH, Blackledge, NP, et al.
2021-04-22

12

Journal article

Enhancers predominantly regulate gene expression during differentiation via transcription initiation

Larke, MSC, Schwessinger, R, Nojima, T, et al.
2021-02-03

13

Journal article

Hypoxia inducible factors regulate hepatitis B virus replication by activating the basal core promoter

Wing, PAC, Liu, PJ, Harris, JM, et al.
2021-01-28

14

Journal article

ETS factors are required but not sufficient for specific patterns of enhancer activity in different endothelial subtypes

Neal, A, Nornes, S, Louphrasitthiphol, P, et al.
2021-01-14

15

Thesis

Characterising the transcriptional profile of CACNA1C expression in rodents

Husain, S
2019

16

Journal article

Transcription reinitiation by recycling RNA polymerase that diffuses on DNA after releasing terminated RNA

Kang, W, Ha, KS, Uhm, H, et al.
2020-01-23

17

Journal article

Incomplete removal of ribosomal RNA can affect chromatin RNA-seq data analysis

Tellier, M, Murphy, S
2020-07-30

18

Journal article

A PCR assay to quantify patterns of HBV transcription

D'Arienzo, V, Magri, A, Harris, JM, et al.
2019-12-17

19

Journal article

Understanding the interplay between CpG island-associated gene promoters and H3K4 methylation

Hughes, AL, Kelley, JR, Klose, RJ
2020-04-29

20

Journal article

Extensive regulation of the non-coding transcriptome by hypoxia: role of HIF in releasing paused RNApol2

Choudhry, H, Schödel, J, Oikonomopoulos, S, et al.
2013-12-22

21

Journal article

Human erythroleukemia genetics and transcriptomes identify master transcription factors as functional disease drivers

Fagnan, A, Bagger, FO, Piqué-Borràs, M-R, et al.
2020-04-29

22

Book section

Pitch vs. Timbre

Walden, D
2019-10-01

23

Thesis

A comparative analysis of nuclear cap binding complex proteins Cbc1, Cbc2 and putative cap binding protein Cbc3 in fission yeast

Ulgen, DH
2019

24

Journal article

Transcription-dependent DNA double-strand breaks and human disease

Cristini, A, Gromak, N, Sordet, O
2020-01-10

25

Journal article

Regulation of the extracellular matrix by ciliary machinery

Collins, I, Wann, AKT
2020-01-23

26

Journal article

Effect of CFIm68 knockdown on RNA polymerase II transcription

Tellier, M, Hardy, J, Norbury, C, et al.
2019-09-02

27

Journal article

Post‐translational control of transcription factors: methylation ranks highly

Carr, S, Poppy Roworth, A, Chan, C, et al.
2015-10-16

28

Journal article

Dual processing of R-loops and topoisomerase I induces transcription-dependent DNA double-strand breaks

Cristini, A, Ricci, G, Britton, S, et al.
2019-09-17

29

Journal article

Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid

Stracy, M, Lesterlin, C, Garza De Leon, F, et al.
2015-07-29

30

Journal article

Why are so many MLL lysine methyltransferases required for normal mammalian development?

Crump, N, Milne, T
2019-05-16

31

Journal article

Comparative analysis of three-dimensional chromosomal architecture identifies a novel fetal hemoglobin regulatory element.

Huang, P, Keller, C, Giardine, B, et al.
2017-09-15

32

Journal article

Effect of CFIm25 knockout on RNA polymerase II transcription

Tellier, M, Hardy, J, Norbury, C, et al.
2018-12-14

33

Journal article

Inherent DNA‐binding specificities of the HIF‐1α and HIF‐2α transcription factors in chromatin

Smythies, J, Sun, M, Masson, N, et al.
2018-11-14

34

Journal article

Diverse mechanisms of IRF5 action in inflammatory responses

Khoyratty, T, Udalova, I
2018-03-22

35

Journal article

Temperature regulates NF-κB dynamics and function through timing of A20 transcription

Harper, C, Woodcock, D, Lam, C, et al.
2018-05-14

36

Journal article

Adventures in defining roles of oxygenases in the regulation of protein biosynthesis

Walport, L, Schofield, C
2018-08-27

37

Journal article

FBXL19 recruits CDK-Mediator to CpG islands of developmental genes priming them for activation during lineage commitment

Dimitrova, E, Kondo, T, Feldmann, A, et al.
2018-05-29

38

Journal article

Diverse mechanisms of IRF5 action in inflammatory responses

Khoyratty, T, Udalova, I
2018-03-22

39

Journal article

The surface-exposed PA51-72-loop of the influenza A virus polymerase is required for viral genome replication

Nilsson-Payant, B, Sharps, J, Hengrung, N, et al.
2018-06-06

40

Journal article

Influenza virus mounts a two-pronged attack on host RNA polymerase II transcription

Bauer, D, Tellier, M, Martinez-Alonso, M, et al.
2018-05-15

41

Journal article

DOT1L and H3K79 methylation in transcription and genomic stability

Wood, K, Tellier, M, Murphy, S
2018-02-27

42

Dataset

Perspective practical: a digital edition (incomplete)

Roberts, T
2018

43

Journal article

Single-molecule and super-resolution imaging of transcription in living bacteria

Stracy, M, Kapanidis, A
2017-04-13

44

Journal article

Targeting and silencing of rhodopsin by ectopic expression of the transcription factor KLF15

Botta, S, de Prisco, N, Marrocco, E, et al.
2017-12-21

45

Journal article

Linking H1 with chromatin and growth control.

Munro, S, La Thangue, N
2017-09-01

46

Journal article

Multiple enhancer regions govern the transcription of CCN2 during embryonic development

Frost, S, Liu, K, Li, I, et al.
2017-12-18

47

Journal article

The SET1 complex selects actively transcribed target genes via multivalent interaction with CpG island chromatin

Brown, D, Di Cerbo, V, Feldmann, A, et al.
2017-09-05

48

Journal article

PARP, transcription and chromatin modeling

Posavec Marjanović, M, Crawford, K, Ahel, I
2016-09-24

49

Journal article

Regulation of expression of human RNA polymerase II-transcribed snRNA genes

Guiro, J, Murphy, S
2017-06-14

50

Thesis

Characterisation of RNA uridylyltransferases in schizosaccharomyces pombe

Scott, D
2012

51

Thesis

Preparing and sequencing ultra-long DNA molecules from single chromosomes

Bauer, D, David L.V. Bauer
2013

52

Journal article

MRG15-mediated tethering of PALB2 to unperturbed chromatin protects active genes from genotoxic stress

Bleuyard, J, Fournier, M, Nakato, R, et al.
2017-07-03

53

Journal article

Linker histone H1.2 directs genome-wide chromatin association of the retinoblastoma tumor suppressor protein and facilitates its function

Munro, S, Hookway, E, Floderer, M, et al.
2017-06-13

54

Thesis

Molecular determinants of chromatin accessibility at CpG islands in mouse embryonic stem cells

King, H
2017

55

Journal article

New horizons in hypoxia signaling pathways

Pugh, C, Ratcliffe, P
2017-03-15

56

Journal article

Is H3K4me3 instructive for transcription activation?

Howe, F, Fischl, H, Murray, S, et al.
2017-01-01

57

Journal article

Increased global transcription activity as a mechanism of replication stress in cancer

Kotsantis, P, Silva, L, Irmscher, S, et al.
2016-10-11

58

Thesis

Quantitative regulation of inducible genes: comparing models of 'on/off' against continuously variable switches

Schneider, C
2015

59

Thesis

A new level of gene regulation: establishing a genome-wide role for antisense transcription

Murray, S, Struan Charles Murray
2013

60

Thesis

Transcriptional regulation by non-coding RNAs in Saccharomyces cerevisiae

Serra Barros, A, Ana Cristina Serra Barros
2012

61

Journal article

E-library of medieval chant manuscript transcriptions

Barton, L, Caldwell, J, Jeavons, P, et al.
2005-01-01

62

Journal article

CTCF regulates NELF, DSIF and P-TEFb recruitment during transcription.

Laitem, C, Zaborowska, J, Tellier, M, et al.
2015-10-01

63

Conference item

Mutational analysis of the PA and PB2 subunits of the influenza RNA polymerase complex leads to new insights into function

Fodor, E, Fechter, P, Crow, M, et al.
2004-01-01

64

Journal article

DUBbing cancer: Deubiquitylating enzymes involved in epigenetics, DNA damage and the cell cycle as therapeutic targets

Pinto-Fernández, A, Kessler, B
2016-07-01

65

Thesis

Specialised transcription factories

Xu, M
2008

66

Journal article

Covalent targeting of remote cysteine residues to develop CDK12 and 13 inhibitors

Bullock, A, Elkins, J, Dixon-Clarke, S, et al.
2016-08-29

67

Thesis

Investigating molecular mechanisms of Dali, an intergenic chromatin-associated lincRNA regulating genes locally and neural differentiation genome-wide

Chalei, V
2014

68

Journal article

The DNA-binding activity of Gal4 is inhibited by methylation of the Gal4 binding site in plant chromatin

Galweiler, L, Conlan, R, Mader, P, et al.
2000-07-01

69

Journal article

The RNA-dependent RNA polymerase of the influenza A virus

Stubbs, T, te Velthuis, A
2014-09-01

70

Journal article

Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B

Kimura, H, Cook, P
2001-06-01

71

Thesis

Structural and mechanistic studies on prolyl hydroxylases

Chowdhury, R
2008

72

Journal article

Transcriptional regulatory functions of nuclear long noncoding RNAs

Vance, K, Ponting, C
2014-01-01

73

Journal article

The La-related proteins, a family with connections to cancer

Blagden, S, Stavraka, C
2015-01-01

74

Journal article

Factors controlling internal initiation of transcription at PRY3 in budding yeast

Lee, B
2008-03-01

75

Journal article

Mechanisms of transcriptional dysregulation in repeat expansion disorders.

Groh, M, Silva, L, Gromak, N
2014-08-01

76

Thesis

Interplay between chromatin conformation and transcription in eukaryotes

Bhardwaj, S
2013

77

Journal article

The long non-coding RNA Dali is an epigenetic regulator of neural differentiation

Chalei, V, Sansom, S, Kong, L, et al.
2014-11-21

78

Journal article

Evolution of complex RNA polymerases: the complete archaeal RNA polymerase structure

Korkhin, Y, Unligil, U, Littlefield, O, et al.
2009-05-01

79

Journal article

Similar active genes cluster in specialized transcription factories

Xu, M, Cook, P
2008-05-01

80

Thesis

Chemical and biological studies on human oxygenases

Thinnes, C, Dr Cyrille C. Thinnes
2014

81

Journal article

E2F-7 couples DNA damage-dependent transcription with the DNA repair process.

Zalmas, L, Coutts, A, Helleday, T, et al.
2013-08-20

82

Journal article

The regulation and functions of the nuclear RNA exosome complex

Kilchert, C, Wittmann, S, Vasiljeva, L
2016-01-04

83

Journal article

First Class Objects and Indexes for Chant Manuscripts

Barton, L, Jeavons, P, Caldwell, J
2007-01-01

84

Thesis

Crosstalk between histone modifications in Saccharomyces cerevisiae

Howe, F
2012

85

Thesis

The regulation and inhibition of P-TEFb

Hole, A
2011

86

Journal article

FOG-1 and GATA-1 act sequentially to specify definitive megakaryocytic and erythroid progenitors

Mancini, E, Sanjuan-Pla, A, Luciani, L, et al.
2012-01-18