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Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison

Abstract:

We present a tool called Rahnuma for prediction and analysis of metabolic pathways and comparison of metabolic networks. Rahnuma represents metabolic networks as hypergraphs and computes all possible pathways between two or more metabolites. It provides an intuitive way to answer biological questions focusing on differences between organisms or the evolution of different species by allowing pathway-based metabolic network comparisons at an organism as well as at a phylogenetic level. Rahnuma ...

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Publication status:
Published
Peer review status:
Peer reviewed

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Institution:
University of Oxford
Department:
Mathematical,Physical & Life Sciences Division - Statistics
Role:
Author
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Institution:
University of Oxford
Department:
Mathematical,Physical & Life Sciences Division - Plant Sciences
Role:
Author
More by this author
Institution:
University of Oxford
Department:
Mathematical,Physical & Life Sciences Division - Statistics
Role:
Author
Publisher:
Oxford University Press Publisher's website
Journal:
Bioinformatics Journal website
Volume:
25
Issue:
14
Pages:
1831-1832
Publication date:
2009-07-05
DOI:
EISSN:
1460-2059
ISSN:
1367-4803
URN:
uuid:269e5c24-f657-4c31-9c56-b1313a161cbe
Local pid:
ora:4595

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