Journal article
GAT: a simulation framework for testing the association of genomic intervals
- Abstract:
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Motivation: A common question in genomic analysis is whether two sets of genomic intervals overlap significantly. This question arises, for example, when interpreting ChIP-Seq or RNA-Seq data in functional terms. Because genome organization is complex, answering this question is non-trivial.
Summary: We present Genomic Association Test (GAT), a tool for estimating the significance of overlap between multiple sets of genomic intervals. GAT implements...
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- Publication status:
- Published
- Peer review status:
- Peer reviewed
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(Version of record, pdf, 103.8KB)
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- Publisher copy:
- 10.1093/bioinformatics/btt343
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Funding
Medical Research Council
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Bibliographic Details
- Publisher:
- Oxford University Press Publisher's website
- Journal:
- Bioinformatics Journal website
- Volume:
- 29
- Issue:
- 16
- Pages:
- 2046-2048
- Publication date:
- 2013-08-01
- DOI:
- EISSN:
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1460-2059
- ISSN:
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1367-4803
Item Description
- Language:
- English
- Keywords:
- Subjects:
- UUID:
-
uuid:2d59dfc1-13fe-45f4-ac5c-4d08a559654c
- Local pid:
- ora:7772
- Deposit date:
- 2014-02-03
Related Items
Terms of use
- Copyright holder:
- Heger et al
- Copyright date:
- 2013
- Notes:
- Copyright The Author 2013. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
- Licence:
- CC Attribution (CC BY)
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