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OSTRFPD: multifunctional tool for genome-wide short tandem repeat analysis for DNA, transcripts, and amino acid sequences with integrated primer designer

Abstract:

Microsatellite mining is a common outcome of the in silico approach to genomic studies. The resulting short tandemly repeated DNA could be used as molecular markers for studying polymorphism, genotyping and forensics. The omni short tandem repeat finder and primer designer (OSTRFPD) is among the few versatile, platform-independent open-source tools written in Python that enables researchers to identify and analyse genome-wide short tandem repeats in both nucleic acids and protein sequences. O...

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Publication status:
Published
Peer review status:
Peer reviewed

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Publisher copy:
10.1177/1176934319843130

Authors


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Role:
Author
ORCID:
0000-0003-3916-9949
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Institution:
University of Oxford
Division:
MSD
Department:
NDM
Sub department:
Tropical Medicine
Role:
Author
ORCID:
0000-0001-5190-2395
More by this author
Institution:
University of Oxford
Division:
MSD
Department:
NDM
Sub department:
Tropical Medicine
Role:
Author
ORCID:
0000-0002-8770-0573
Wellcome Trust More from this funder
Publisher:
SAGE Publications Publisher's website
Journal:
Evolutionary Bioinformatics Journal website
Volume:
15
Article number:
1176934319843130
Publication date:
2019-04-23
Acceptance date:
2019-03-15
DOI:
EISSN:
1176-9343
ISSN:
1176-9343
Pmid:
31040636
Language:
English
Keywords:
Pubs id:
995542
Local pid:
pubs:995542
Deposit date:
2020-11-06

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