Journal article icon

Journal article

Interpreting viral deep sequencing data with GLUE

Abstract:

Using deep sequencing technologies such as Illumina's platform, it is possible to obtain reads from the viral RNA population revealing the viral genome diversity within a single host. A range of software tools and pipelines can transform raw deep sequencing reads into Sequence Alignment Mapping (SAM) files. We propose that interpretation tools should process these SAM files, directly translating individual reads to amino acids in order to extract statistics of interest such as the proportion ...

Expand abstract
Publication status:
Published
Peer review status:
Peer reviewed

Actions


Access Document


Files:
Publisher copy:
10.3390/v11040323

Authors


More by this author
Role:
Author
ORCID:
0000-0001-6989-475X
More by this author
Role:
Author
ORCID:
0000-0003-1482-0889
More by this author
Role:
Author
ORCID:
0000-0003-2556-2563
More by this author
Role:
Author
ORCID:
0000-0003-2637-2307
More by this author
Role:
Author
ORCID:
0000-0003-2217-9948
Expand authors...
Publisher:
MDPI Publisher's website
Journal:
Viruses Journal website
Volume:
11
Issue:
4
Pages:
323
Publication date:
2019-04-03
Acceptance date:
2019-03-14
DOI:
EISSN:
1999-4915
ISSN:
1999-4915
Pmid:
30987147
Source identifiers:
991807
Language:
English
Keywords:
Pubs id:
pubs:991807
UUID:
uuid:4f7b1fa9-2ecb-40cd-9ab7-17da701977b3
Local pid:
pubs:991807
Deposit date:
2019-05-09

Terms of use


Views and Downloads






If you are the owner of this record, you can report an update to it here: Report update to this record

TO TOP