Journal article
The multifurcating skyline plot
- Abstract:
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A variety of methods based on coalescent theory have been developed to infer demographic history from gene sequences sampled from natural populations. The ‘skyline plot’ and related approaches are commonly employed as flexible prior distributions for phylogenetic trees in the Bayesian analysis of pathogen gene sequences. In this work we extend the classic and generalized skyline plot methods to phylogenies that contain one or more multifurcations (i.e. hard polytomies). We use the theory of Λ...
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- Publication status:
- Published
- Peer review status:
- Peer reviewed
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(Version of record, 420.9KB)
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- Publisher copy:
- 10.1093/ve/vez031
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Authors
Funding
European Research Council
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Bibliographic Details
- Publisher:
- Oxford University Press Publisher's website
- Journal:
- Virus Evolution Journal website
- Volume:
- 5
- Issue:
- 2
- Article number:
- vez031
- Publication date:
- 2019-08-29
- Acceptance date:
- 2019-07-22
- DOI:
- EISSN:
-
2057-1577
- Pmid:
-
31528357
Item Description
- Language:
- English
- Keywords:
- Pubs id:
-
1056050
- Local pid:
- pubs:1056050
- Deposit date:
- 2020-06-15
Terms of use
- Copyright holder:
- Hoscheit and Pybus
- Copyright date:
- 2019
- Rights statement:
- © The Authors 2019. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
- Licence:
- CC Attribution-NonCommercial (CC BY-NC)
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