Dataset
3D histology reconstruction with external blockface reference. Full mouse heart, 600 sections
- Alternative title:
- 3D reconstruction of Picro sirius red histology data using Transformation Diffusion Reconstruction
- Version:
- 1.0
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Authors/Creators
Contributors
+ Schneider, J
Institution:
University of Oxford
Division:
MSD
Department:
NDM
Sub department:
Human Genetics Wt Centre
Role:
Principal Investigator (PI)
+ Grau, V
Institution:
University of Oxford
Division:
MPLS
Department:
Engineering Science
Sub department:
Institute of Biomedical Engineering
Role:
Principal Investigator (PI)
Funding
+ British Heart Foundation
More from this funder
Funding agency for:
Schneider, J
Grant:
FS/11/50/29038
Expand funders...
Bibliographic Details
- Publisher:
- Institute for Experimental Cardiovascular Medicine, University of Freiburg; Institute of Biomedical Engineering, Department of Engineering Science and Wellcome Trust Centre for Human Genetics, University of Oxford; Heart Science Centre, National Lung and Heart Institute, Imperial College London
- Publication date:
- 2017
- Version number:
- 1.0
- DOI:
Item Description
- Keywords:
- Subjects:
- Documentation:
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Mouse heart Picro sirius red histology was reconstructed using the Transformation Diffusion Reconstruction (TDR) method in (Casero et al. 2017). Histology slices were downsampled by a factor of x24.6 down to blockface pixel size, and pre-aligned to the blockface using rigid registration, followed by rigid TDR refinement (M=150 stack sweeps) and B-spline ATDR refinement (M=80). We then applied the low resolution refinement to the original histology downsampled only by a factor of 2. In this ... Expand documentation
- UUID:
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uuid:716fe2ef-f965-40ff-8da4-8a5ad48f4aea
- Deposit date:
- 2017-03-28
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Terms of use
- Copyright holder:
- University of Oxford. University of Freiburg
- Copyright date:
- 2017
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