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Working paper

Oxford Nanopore MinION sequencing enables rapid whole-genome assembly of Rickettsia typhi in a resource-limited setting

Abstract:

The infrastructure challenges and costs of next-generation sequencing have been largely overcome, for many sequencing applications, by Oxford Nanopore Technologies portable MinION sequencer. However the question remains open whether MinION-based bacterial whole-genome sequencing (WGS) is by itself sufficient for the accurate assessment of phylogenetic and epidemiological relationships between isolates and whether such tasks can be undertaken in resource-limited settings. To investigate this q...

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Publication status:
Not published
Peer review status:
Reviewed (other)

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Publisher copy:
10.1101/292102

Authors


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Institution:
University of Oxford
Division:
Medical Sciences Division
Department:
NDM
Sub department:
Tropical Medicine
Role:
Author
ORCID:
0000-0003-4260-5449
More by this author
Institution:
University of Oxford
Division:
Medical Sciences Division
Department:
NDM
Sub department:
Tropical Medicine
Role:
Author
More by this author
Institution:
University of Oxford
Division:
Medical Sciences Division
Department:
NDM
Sub department:
Tropical Medicine
Role:
Author
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More from this funder
Funding agency for:
Elliott, I
Grant:
Core Awards: 203141/Z/16/Z
More from this funder
Funding agency for:
Elliott, I
Grant:
Core Awards: 203141/Z/16/Z
Series:
BioRxiv
Host title:
BioRxiv
Publication date:
2018-08-15
DOI:
Source identifiers:
911934
Pubs id:
pubs:911934
UUID:
uuid:8038688f-7eee-4efc-bd02-f0066995bc64
Local pid:
pubs:911934
Deposit date:
2018-11-21

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