Journal article
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads
- Abstract:
-
Antimicrobial resistance (AMR) is one of the major threats to human and animal health worldwide, yet few high-throughput tools exist to analyse and predict the resistance of a bacterial isolate from sequencing data. Here we present a new tool, ARIBA, that identifies AMR-associated genes and single nucleotide polymorphisms directly from short reads, and generates detailed and customizable output. The accuracy and advantages of ARIBA over other tools are demonstrated on three datasets from Gram...
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- Publication status:
- Published
- Peer review status:
- Peer reviewed
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Authors
Funding
Bibliographic Details
- Publisher:
- Microbiology Society Publisher's website
- Journal:
- Microbial Genomics Journal website
- Volume:
- 3
- Issue:
- 10
- Article number:
- e000131
- Publication date:
- 2017-09-04
- Acceptance date:
- 2017-08-01
- DOI:
- ISSN:
-
2057-5858
- Pmid:
-
29177089
Item Description
- Language:
- English
- Keywords:
- Pubs id:
-
pubs:1020258
- UUID:
-
uuid:8fcd9d9a-ef0c-40d8-8d2f-f428eaef995f
- Local pid:
- pubs:1020258
- Source identifiers:
-
1020258
- Deposit date:
- 2019-07-03
Terms of use
- Copyright holder:
- Hunt et al
- Copyright date:
- 2017
- Notes:
- © 2017 The Authors. Published by the Microbiology Society. This is an open access article published by the Microbiology Society under the Creative Commons Attribution License.
- Licence:
- CC Attribution (CC BY)
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