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Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications

Abstract:

The PubMLST.org website hosts a collection of open-access, curated databases that integrate population sequence data with provenance and phenotype information for over 100 different microbial species and genera. Although the PubMLST website was conceived as part of the development of the first multi-locus sequence typing (MLST) scheme in 1998 the software it uses, the Bacterial Isolate Genome Sequence database (BIGSdb, published in 2010), enables PubMLST to include all levels of sequence dat...

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Publication status:
Published
Peer review status:
Peer reviewed

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Publisher copy:
10.12688/wellcomeopenres.14826.1

Authors


More by this author
Institution:
University of Oxford
Division:
MPLS Division
Department:
Zoology
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MPLS Division
Department:
Zoology
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MPLS
Department:
Zoology
Oxford college:
Hertford College
Role:
Author
ORCID:
0000-0001-6321-5138
Publisher:
F1000Research Publisher's website
Journal:
Wellcome Open Research Journal website
Volume:
3
Issue:
124
Publication date:
2018-09-24
Acceptance date:
2018-10-15
DOI:
EISSN:
2398-502X
Source identifiers:
928733
Keywords:
Pubs id:
pubs:928733
UUID:
uuid:9978d96f-4389-4fb7-807e-003064166e29
Local pid:
pubs:928733
Deposit date:
2018-10-17

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